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This page contains a collection of AltaViewer example datasets, images, and movies. The example datasets can be read into AltaViewer, and the images and movies were produced using AltaViewer.

 

Example Datasets

As described in the User Guide, AltaViewer can read in a variety of 3D imaging data file formats (e.g. NRRD, VFF, UVF, and NMDX), and can convert other formats (e.g. DICOM) into formats that AltaViewer natively supports. Users with datasets in these formats are encouraged to load their data into AltaViewer for exploration. For users who do not already have example datasets on-hand, we have provided three small example datasets, linked below. Each example is a .zip archive containing two input files: a NRRD file, and a NMDX file. The NRRD file contains the raw microCT imaging data (for the soft-tissue datasets, the data was imaged using Numira's proprietry Virtual HistologyTM method). The NMDX file contains "meta-information" (or settings) to facilitate viewing the data (e.g. window/level, camera view, crop information, etc.). After downloading and unzipping an example, double-click on the NMDX file to reproduce the thumbnail view shown below. (Note: Although AltaViewer can interactively visualize very large datasets, to reduce download times we have significantly down-sampled these examples from their original full-resolution versions.)

data-1

Volume Rendering of Mouse Embryo E11 (gestation day 11) microCT Virtual Histology Scan Original Dataset Size: 700MB
Example Dataset Size: 15MB

thumb_data-3

Volume Rendering of Rat Paw microCT Bone Scan
Original Dataset Size: 3.4GB
Example Dataset Size: 30MB

thumb_data-2

Sagittal Slice of P0 Rat (newborn rat pup) microCT Virtual Histology Scan
Original Dataset Size: 1.2GB
Example Dataset Size: 50MB



Images and Movies

The thumbnail images below are linked to example high-resolution images and movies generated with AltaViewer. Click the thumbnail images to see examples of the richly detailed visualizations that AltaViewer can produce.


Volume Rendering Images

numira-pfx-vr-skeleton

Volume Rendering of a P0 Rat Skeleton; Specimen Imaged with microCT

paw-vr

Volume Rendering of a Rat Paw; Specimen Imaged with microCT

spine

Volume Rendering of a Rat Spine; Specimen Imaged with microCT


Maximum Intensity Projection (MIP) Images

zf-mip-vh

MIP of an Adult Zebrafish; Specimen Imaged with microCT Virtual Histology

paw-mip

MIP of a Rat Paw; Specimen Imaged with microCT


Slice Images

p0-sagittal

Sagittal Slice of a P0 Rat; Specimen Imaged with microCT Virtual Histology

p0-coronal

Coronal Slice of a P0 Rat; Specimen Imaged with microCT Virtual Histology

p0-axial

Axial Slice of a P0 Rat; Specimen Imaged with microCT Virtual Histology

spine-slice

Coronal Slice of a Rat Spine; Specimen Imaged with microCT

zf-sagittal-slice

Sagittal Slice of an Adult Zebrafish; Specimen Imaged with microCT Virtual Histology


Thick Slice Images

p0-thick-full

MIP through 100 Coronal Slices of a P0 Rat; Specimen Imaged with microCT Virtual Histology

p0-thick-zoom1

MIP through 100 Coronal slices of a P0 Rat with 2x zoom; Specimen Imaged with microCT Virtual Histology

p0-thick-zoom2

MIP through 100 Coronal slices of a P0 Rat with 5x zoom; Specimen Imaged with microCT Virtual Histology


Volume Rendering Movies

thumb_pfx-vr-skeleton

Volume Rendering of a P0 Rat Skeleton; Specimen Imaged with microCT

thumb_spine

Volume Rendering of a Rat Spine; Specimen Imaged with microCT



Maximum Intensity Projection (MIP) Movies

thumb_zf-mip-vh

MIP of an Adult Zebrafish; Specimen Imaged with microCT Virtual Histology

thumb_paw-mip

MIP of a Rat Paw; Specimen Imaged with microCT



Planar Movies

thumb_p0-sagittal

Sagittal Slice Movie of a P0 Rat; Specimen Imaged with microCT Virtual Histology

thumb_zf-sagittal-slice

Sagittal Slice Movie of an Adult Zebrafish; Specimen Imaged with microCT Virtual Histology


 

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